rs48384942 SNP Detail

Summary

• ID
  rs48384942
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:33283562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCAGACCGA AGAACAGGTT CCAAAACCCC AGGAATTTGC
  ATAATTGAGA ATGGCAGGTG CTAGAACCAG CTCCAGGCAG GGCCTACCTG TCCTGGAGCA
  Y
  GTAATCACGA CTCTCCATTG AAAGGGCCAT GACAACCAGT CACATAGGGA CAACACCTGA
  AGGTCTTCCC CATGCAAATA ACGCATCCCT AACTTCTCA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60716588	NES16352492	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T	C	C	T	T	T	T
ss148869293	ENSMUSSNP4251923	ENSEMBL	ENSEMBL_Sanger	f	SNP		T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48384942					SNP	T	T	C	C	T	C	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60716588	NES16352492	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:33283562 () rs orientation: forward

Symbol	Name	Function Class
Gm70823	predicted gene, 70823	542 bp upstream