rs48387140 SNP Detail

Summary

• ID
  rs48387140
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:154065178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTTTGACTG CTTCTTATGA CATATTTAAC CAGAGACAGA
  AGTCTGCCTC TCCTACTACA GCACAGTATA TGCTATGCCA CCATTACTGT GGGGCCTACT
  Y
  GGTGTGACCA TTAATCAAGG CCAACACTCT TGGTCTAGTG AACAACCAAA CTAGAGAGAG
  GACTGGCCAG GTGCATTCTG CTAGAAATCA TTAGACCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145757312	ENSMUSSNP4027629	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48387140					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:154065178 () rs orientation: forward

Symbol	Name	Function Class
Rr420823	regulatory region 420823	316 bp distal
Rr420824	regulatory region 420824	682 bp proximal