rs48387281 SNP Detail

Summary

• ID
  rs48387281
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:51418171 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCAATGGC TCTATTTAAA
  ATGATCCCAG GGCTTGGAGC TCATGTCCTT GTCTTAAACA TTCAGGTTTC TATTTGGAAG
  TTGGCCTGTA TTTGGTTTTT GATTCCGGTT TGTTTTGTTT TGTTTTTGTA CTGGACTTCT
  GGTCGTTAGC CATAGTGAAT ATGGGGCACT TGTGTCTTAG CTTCGGTTAC CTAGAGGACG
  Y
  CAGCTGTTAT CAAGCTGGTT TATGGCCTCC TCCAAGGGCC TTCAGAAGTG GATTTGCATG
  CCTCGAATTT TACTACTGAA ACCTTCTAAC ATAGGAGACC AGAGGAGAAA GTGGAGCTTA
  GGAAAACAAG CCTCTTTCCC ACCATCCAGC ATGTCTAGTT TAGAGAGTCC TGACTCGTTT
  GTAGCCCCTG CCTACACTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	MOLF/EiJ	PWD/PhJ
ss60886249	NES15973409	PERLEGEN	MM_PANEL2	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	MOLF/EiJ	PWD/PhJ
rs48387281					SNP	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60886249	NES15973409	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:51418171 () rs orientation: forward

Symbol	Name	Function Class
Nfe2l3	nuclear factor, erythroid derived 2, like 3	within coordinates
Rr135769	regulatory region 135769	1030 bp proximal
Rr140576	regulatory region 140576	171 bp distal
Rr149651	regulatory region 149651	971 bp proximal
Rr379346	regulatory region 379346	696 bp upstream