rs48388351 SNP Detail

Summary

• ID
  rs48388351
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:73358029 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGGGGA GGGGAGGGAA
  GGGAAGGGAA GGGAGACACT CCTCCCTGCC TGTCCCCTCC TTTGCTGGCT GAAGGGTCAG
  TCTGCTGCTG CATCTGCCAT CTCTCTGCCA TCCTCCATGA CCTGAATCAA ACTCCAGCTG
  CTTTTTAAAC CTTCTAACAG GGACTGGAAG ACCAGCAACT CTATCGGAAT AGTCTAGACC
  K
  GCAGTGCTAC ATTGGTACTT CTGAGGCATC TGGGTTTGTG GACTGAATAG CTGTTGGTTT
  TCTGTTCTCT CCAGGGTGCA GTAGCAATTG CTGGGCTACC TGGCTCCCCA CCCCTGTGGC
  TTCTTGTCCT CTAGGGAACC CTGCCTAAAA TACCGTGTAC CACCCACCCA TCTACCTAAC
  AAATAGCTCT TGAGGTCTAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148110578	ENSMUSSNP1472701	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48388351					SNP	T	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:73358029 () rs orientation: forward

Symbol	Name	Function Class
Gm63120	predicted gene, 63120	within coordinates
Rr504083	regulatory region 504083	37 bp proximal
Tssr4621	transcription start site region 4621	1642 bp upstream
Tssr4622	transcription start site region 4622	1704 bp upstream
Tssr131529	transcription start site region 131529	1654 bp upstream
Tssr134702	transcription start site region 134702	1088 bp downstream
Tssr134703	transcription start site region 134703	1128 bp downstream
Tssr134704	transcription start site region 134704	1143 bp downstream
Tssr134705	transcription start site region 134705	1155 bp downstream