rs48388656 SNP Detail

Summary

• ID
  rs48388656
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:91399751 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAAGAAGCA GCTTATGTGT
  TACCTTGCTT TGAGTCAATA CTTAAGATAG TAAACTCATA CAACTTGGAT TGCGTCTTTG
  GGCTGCTGTA AAAGATTCAG GTACTGGTCA CTGCTTACTG CATAGAAATC CAAAAAGAAA
  AAGAACTAGC CTTTATGCTT TTTATACAAA AAGGAGGATT ACTTTACAAG CTCTTTTCTT
  Y
  CCTGCTAAAT TTAATGACAA GGATTACATG TTTTATAAAG GGGGTGGTGA AACCTATATA
  GAAGTTTCTA TTGAGTGCTA TAGCCTAATA AGAACCTAAG TTGAAAGGGG GAGCTAACCT
  CCTTGCTTTC AGTGGAAAAG CAGTAAATGT CAGCTTGAGG CTTAGTGGTT TATGATGCGT
  GGAGACTTAC CATGGTCCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
ss52679870	NES15527266	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ
rs48388656					SNP	C	C	C	C	C	T	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52679870	NES15527266	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:91399751 () rs orientation: forward

Symbol	Name	Function Class
Gm41014	predicted gene, 41014	within coordinates
Gm47381	predicted gene, 47381	within coordinates