rs48389066 SNP Detail

Summary

• ID
  rs48389066
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:29579914 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTTC CTCTTTTTTC ACTCTGAAGA
  W
  AGGAACTGCC CCAAGGCAGT CAGAA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145431555	ENSMUSSNP1943502	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48389066					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:29579914 () rs orientation: forward

Symbol	Name	Function Class
Fgd2	FYVE, RhoGEF and PH domain containing 2	within coordinates
Rr405148	regulatory region 405148	within coordinates
Rr524885	regulatory region 524885	16 bp distal
Rr524886	regulatory region 524886	182 bp proximal
Rr524887	regulatory region 524887	680 bp proximal
Tssr143531	transcription start site region 143531	20 bp downstream
Tssr143532	transcription start site region 143532	within coordinates
Tssr143533	transcription start site region 143533	16 bp upstream
Tssr143534	transcription start site region 143534	29 bp upstream