rs48390293 SNP Detail

Summary

• ID
  rs48390293
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:77873230 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCTCCTTGGT CGTGACTGAG GACTCCAAGG GCATGGTAGC
  CCCAAATCTC ATTACCAAAA TGGCGAAAGG AGAAGCTTTT TTTTTTTTTT TTTTTTTTTG
  K
  GCAGGCCTCC AGGTACAACG CGCCTGCGCG TGAGGCGGCT GTGTGAGGGG ACGGGAGGGT
  GGCGACCCAA CACGCCTGCG CGGGACCAGA GCCCGTGGTC C                    
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132447619	ENSMUSSNP6999589	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48390293					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:77873230 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3325	CpG island 3325	within coordinates
D11Bhm45	DNA segment, Chr 11, Boehm 45	1580 bp proximal
Gm53689	predicted gene, 53689	within coordinates
Phf12	PHD finger protein 12	350 bp upstream
Rr386326	regulatory region 386326	within coordinates
Rr451838	regulatory region 451838	1141 bp distal
Rr451839	regulatory region 451839	1985 bp distal
Rr451840	regulatory region 451840	within coordinates
Tssr103207	transcription start site region 103207	242 bp downstream
Tssr103208	transcription start site region 103208	236 bp upstream
Tssr103209	transcription start site region 103209	306 bp upstream
Tssr103210	transcription start site region 103210	421 bp upstream
Tssr103211	transcription start site region 103211	473 bp upstream