rs48390838 SNP Detail

Summary

• ID
  rs48390838
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45235298 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG GGGTCTCAAG ATTCTCTTGT
  Y
  TGAGGGTATC CCCAGAGTGA TGGCT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136409288	ENSMUSSNP175254	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss322943006	CHEV_9_45132083	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48390838					SNP	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45235298 () rs orientation: forward

Symbol	Name	Function Class
Lncbate3	brown adipose tissue enriched long noncoding RNA 3	1921 bp upstream
Rr203899	regulatory region 203899	698 bp proximal
Rr203900	regulatory region 203900	1595 bp proximal
Tmprss13	transmembrane protease, serine 13	within coordinates