rs48392655 SNP Detail

Summary

• ID
  rs48392655
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57172748 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCT AATTAGTGCT TCGATGTGTG
  Y
  CTGTGGAAAC GAACAAGCTC CTCCC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss60467750	NES16458713	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		C	C		T
ss325201084	CHEV_16_57352498	CHEVERUD	SCREENING_POP	f	SNP									T			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs48392655					SNP	T	T	T	T	T	T	T	T	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60467750	NES16458713	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57172748 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	628 bp upstream
Rr517288	regulatory region 517288	259 bp proximal
Rr517289	regulatory region 517289	1653 bp proximal
Tssr138825	transcription start site region 138825	386 bp upstream
Tssr138826	transcription start site region 138826	428 bp upstream
Tssr138827	transcription start site region 138827	597 bp upstream
Tssr138828	transcription start site region 138828	621 bp upstream
Tssr138829	transcription start site region 138829	717 bp upstream
Tssr138830	transcription start site region 138830	853 bp upstream
Tssr138831	transcription start site region 138831	886 bp upstream
Tssr138832	transcription start site region 138832	911 bp upstream
Tssr141600	transcription start site region 141600	1807 bp upstream
Tssr141601	transcription start site region 141601	747 bp downstream
Tssr141602	transcription start site region 141602	795 bp downstream