rs48392849 SNP Detail

Summary

• ID
  rs48392849
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45174009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGAT TTCTAAGAAA GTTTTGACCC
  M
  TGGTGAATTT CTCCTTTGTT GCTGA                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61388324	NES16765012	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	A	A	A		A	C	C		C
ss136408171	ENSMUSSNP7127730	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss322942709	CHEV_9_45070794	CHEVERUD	SCREENING_POP	f	SNP										C				A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48392849					SNP	C	A	A	A	A	A	A	A	A	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61388324	NES16765012	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45174009 () rs orientation: forward

Symbol	Name	Function Class
Gm20612	predicted gene 20612	1421 bp downstream
Il10ra	interleukin 10 receptor, alpha	within coordinates
Rr677873	regulatory region 677873	912 bp distal
Tssr89253	transcription start site region 89253	178 bp downstream
Tssr89254	transcription start site region 89254	245 bp downstream
Tssr89255	transcription start site region 89255	335 bp downstream
Tssr89256	transcription start site region 89256	359 bp downstream
Tssr89257	transcription start site region 89257	1465 bp downstream
Tssr89258	transcription start site region 89258	1506 bp downstream
Tssr89259	transcription start site region 89259	1529 bp downstream