rs48393141 SNP Detail

Summary

• ID
  rs48393141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:90626619 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AAAAGATTGT GTGTGTGTGG GGGGGGGGGC AGAGTAGAGT
  TCGAGTTCGT GGGTCCCCTG AGAGAGATTC AGGGTGGTTG CAAGCTGCCA GCGCTGGGTG
  Y
  TGGAATCTGA ACTAGTGTCC TCTGGAAAAG CAGCAAGTTC TATTAACCGC TGAGCCATCT
  CTCCAGCCCA AGGCTATGCA AACTGGGTCT CTCCATACA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148543106	ENSMUSSNP1600378	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48393141					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:90626619 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8431	CpG island 8431	138 bp proximal
Eva1c	eva-1 homolog C	within coordinates
Rr519212	regulatory region 519212	1836 bp distal
Rr519213	regulatory region 519213	638 bp proximal
Tssr139312	transcription start site region 139312	350 bp upstream
Tssr139313	transcription start site region 139313	385 bp upstream
Tssr139314	transcription start site region 139314	674 bp upstream
Tssr139315	transcription start site region 139315	1099 bp upstream
Tssr139316	transcription start site region 139316	1398 bp upstream
Tssr139317	transcription start site region 139317	1484 bp upstream