rs48393273 SNP Detail

Summary

• ID
  rs48393273
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148416505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTTCTGAACT GTGTGAAAGT GGAGAAATCA AGCTGAGTAC
  ATGCAAGCAA ACATGCATTC ACTTCTGTCT GCTCCTGACC ATATATGTGA TGTGACTAGT
  A
  GCTCGGAGTT CCTGCCTTGA CTTCCTTACA GTGACGGTCT GTAACCTGAA ATTATAATCA
  GAAATGAGCC CCTTCCTCCC CTACACTGCC TTTTGCTCA                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss148002142	ENSMUSSNP2872861	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321419270	CHEV_4_147706157	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48393273					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148416505 () rs orientation: forward

Symbol	Name	Function Class
Gm68587	predicted gene, 68587	1402 bp upstream
Rr93055	regulatory region 93055	1704 bp distal
Tssr40269	transcription start site region 40269	259 bp upstream
Tssr40270	transcription start site region 40270	1431 bp upstream