rs48393319 SNP Detail

Summary

• ID
  rs48393319
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr5:115190874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCTCC ACCACACTGC ACTGCACTGC
  G
  CTGCGCTGCG CTGCACTGCT TTGTA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J
ss149120718	ENSMUSSNP5670929	ENSEMBL	ENSEMBL_Sanger	f	SNP	G
SNP Consensus Information
SNP					Consensus Type	A/J
rs48393319					SNP	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:115190874 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm13827	predicted gene 13827			654 bp downstream
Rr378497	regulatory region 378497			1324 bp downstream
Rr618105	regulatory region 618105			within coordinates
Rr618106	regulatory region 618106			1038 bp proximal
Sppl3	signal peptide peptidase 3			Intron
				Noncoding-Transcript-Variant
Tssr48203	transcription start site region 48203			646 bp upstream