rs48393813 SNP Detail

Summary

• ID
  rs48393813
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164148009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T TATTGTGCTA CATATATTTA GATCCAGCAT TTTCGTTTTG
  TCTCAAATCC ATTTCTTCTC TTAGAATTGA GCTTAGTTGA TAGGTGTCAT GCATTCCCTG
  M
  GGGTAGTCTT TGCCCCGTTT TACCTAACAC CGCGTCAACT GTTCTGTAAG GCGCTAGCCA
  AGGACCACGG GTAAGGGGCC TGAGGCGGGG GAGGGGGAGC T                    
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss145976446	ENSMUSSNP5186828	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48393813					SNP	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164148009 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Nme7	NME/NM23 family member 7			Intron
				Noncoding-Transcript-Variant
Rr422185	regulatory region 422185			271 bp distal
Rr422186	regulatory region 422186			302 bp proximal
Rr422187	regulatory region 422187			854 bp proximal