rs48393869 SNP Detail

Summary

• ID
  rs48393869
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78430393 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAAGGCCTT ATTACAATAC
  ACTAAGTTGT TACTAAGGTA AACAATTTTA GATGACCTAC TTTTTTCCCA GAGCTGCCCC
  AACATAAAAG CTAAACTTAG GCATTTGGCG AGGGGGCCTC TAACTCCATA GGCGGAAGTC
  TTGGCGATGG CCTTCAAGGT GTACCATGAG AGAGATGAGA AAGCCCAAAA ACAAAAACAC
  Y
  GCAAGCTGGC AAAGGCTGTC CGACCAGCTC TAGCTACTAC CCCGAACTCC TGGCCTTCTA
  AGGTTCAGGG ACCACTAGCC CCTTGCTATA GATGTGGTCA GCAAGGTCAT TGGGTGAGGT
  TTTGCCCTAC GCCCCACAAG CCAAGGGGAC CGTGTCCTAA GTGCCGTCAG GAGGGACATT
  GGGCTGTCGA TAGCCCTCGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136668110	ENSMUSSNP6679197	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss323016429	CHEV_9_78370918	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48393869					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78430393 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22070	CpG island 22070	1989 bp distal
Gm47430	predicted gene, 47430	954 bp downstream
Gm69163	predicted gene, 69163	1908 bp upstream
Rr206776	regulatory region 206776	992 bp distal
Rr383643	regulatory region 383643	1332 bp upstream