rs48394201 SNP Detail

Summary

• ID
  rs48394201
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:65544959 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTA AAGTTAATGA ATTATTGCAA
  W
  AAAGAACAAT GGGATTTATT CAATA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135252853	ENSMUSSNP6176534	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48394201					SNP	A	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:65544959 () rs orientation: forward

Symbol	Name	Function Class
Gm65444	predicted gene, 65444	1065 bp downstream
Rr577715	regulatory region 577715	1307 bp distal
Rr577716	regulatory region 577716	within coordinates
Rr577717	regulatory region 577717	1380 bp proximal
Rr577718	regulatory region 577718	1778 bp proximal
Tssr33467	transcription start site region 33467	1740 bp downstream