rs48394324 SNP Detail

Summary

• ID
  rs48394324
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69572589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGCG GCGACCCCGC CACTCCTGCT
  R
  TCCTCAGGCG GAGCCGTCTC AATTC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323731041	CHEV_11_69495265	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48394324					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69572589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3142	CpG island 3142	within coordinates
Rr450067	regulatory region 450067	within coordinates
Rr450068	regulatory region 450068	73 bp proximal
Rr450069	regulatory region 450069	311 bp proximal
Rr450070	regulatory region 450070	1179 bp proximal
Senp3	SUMO/sentrin specific peptidase 3	within coordinates
Tnfsf13	tumor necrosis factor (ligand) superfamily, member 13	1083 bp downstream
Tnfsf13os	tumor necrosis factor (ligand) superfamily, member 13, opposite strand	269 bp upstream
Tnfsfm13	tumor necrosis factor (ligand) superfamily, membrane-bound member 13	814 bp downstream
Tssr108773	transcription start site region 108773	1098 bp upstream
Tssr108774	transcription start site region 108774	30 bp downstream
Tssr108775	transcription start site region 108775	59 bp downstream
Tssr108776	transcription start site region 108776	107 bp downstream
Tssr108777	transcription start site region 108777	140 bp downstream
Tssr108778	transcription start site region 108778	196 bp downstream
Tssr108779	transcription start site region 108779	231 bp downstream
Tssr108780	transcription start site region 108780	307 bp downstream