rs48395488 SNP Detail

Summary

• ID
  rs48395488
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:115219484 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATCAGAGGG ATTTTGAAAG
  TGGCAGCTTT TAGTTAGGGG ATGCACGTAG TAACAGTGAG GTAGGAAAAA GAGCAAAGAT
  ATTTCTAAGA TCACAAGGTA TAATGGTACA GCATATAAAA TCAGAACTGT TTTCAGTTTA
  GTTTTCAGTA TTTCTTTTCT TCAGGCAGTT GGCAGTTCTA GAAGGAAAGG TGACCATTTA
  Y
  TGAGTGCCGC CTATTATATT CAAGTCGGTG TTCACATGCT TTGGAGTTTG ACTTAACAGA
  ATTAAAGACA TGACTGTACG TTCAACCTGT GTGTGAGTGC GTGATTCTGT TCAAGAGAGA
  GTTTCTATTT GCTCTTTGAT AAACATTGCT TAATTAGATT GACTCAGTTA CCATGTGTGA
  CTATTAGAAA TGTTTCCCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
ss52214195	NES15331634	PERLEGEN	MM_PANEL2	f	SNP	C	C		T
ss323484713	CHEV_10_114820635	CHEVERUD	SCREENING_POP	f	SNP			C		T
SNP Consensus Information
SNP					Consensus Type	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	SM/J
rs48395488					SNP	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52214195	NES15331634	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:115219484 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2206	CpG island 2206	456 bp proximal
Rr402239	regulatory region 402239	1149 bp upstream
Rr439213	regulatory region 439213	within coordinates
Rr439214	regulatory region 439214	714 bp proximal
Rr439215	regulatory region 439215	821 bp proximal
Rr439216	regulatory region 439216	1380 bp proximal
Rr439217	regulatory region 439217	1643 bp proximal
Thap2	THAP domain containing, apoptosis associated protein 2	within coordinates
Tssr95813	transcription start site region 95813	338 bp upstream
Tssr95814	transcription start site region 95814	1342 bp upstream
Tssr95815	transcription start site region 95815	1372 bp upstream
Tssr95816	transcription start site region 95816	1466 bp upstream
Tssr99330	transcription start site region 99330	747 bp downstream
Tssr99331	transcription start site region 99331	758 bp downstream
Tssr99332	transcription start site region 99332	809 bp downstream
Tssr99333	transcription start site region 99333	897 bp downstream
Tssr99334	transcription start site region 99334	937 bp downstream
Tssr99335	transcription start site region 99335	1172 bp downstream
Zfc3h1	zinc finger, C3H1-type containing	1380 bp upstream