rs48395678 SNP Detail

Summary

• ID
  rs48395678
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86975950 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTAGTTGT GATAGCCTTA
  AAATTTGAAA GTCAGGGTTT GGGTGCACAA GGCAGCAGCA GAAGATATGC TTAGCTTGCA
  CAATGCCCTG GGGTCTGTCG TCAGTACACA AAAACAATAC AGTTAAATCT AGAAGTCTTG
  ACGGTAATAT AAGAATGACT ATTTTTTTAT GATATCAGGT ACTTTTAACC CCAGAACTTG
  Y
  GAGGCAAGGA CAGGTGGATC TCTGTGAGTT TGAAGCCAGC CTGTCTACAT AACAAGTTCC
  AGTCCAGCCA GTGAGTGAAA CCCTGTCTTT AGAGGGGGGT AGGGGGCTAT TTTTCCCTCT
  TTTCTTCATA GCATTCTCCA CCTGTTTCAA TAACAGGCAC TGCGTCGGGG CCCATAGCAG
  CGCCATTTGA GGACTCCACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133361185	ENSMUSSNP6734453	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48395678					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86975950 () rs orientation: forward

Symbol	Name	Function Class
Aak1	AP2 associated kinase 1	mRNA-UTR
Rr633570	regulatory region 633570	1729 bp distal