rs48396590 SNP Detail

Summary

• ID
  rs48396590
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:17696188 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGATTC TCAGCACAGC
  CTCCAAGGGT TGTAGCCTTT ACCATTAAAG TCCCATGGTT TAGCCACCAT GGCTGCTCCG
  CCTCACATCA TAAGGCTCCT TTTCCTACAC ATATATAGAC CACTTTGGGG GTCAAAACTT
  GCCACACTAC TTACACAAAG TCCGCTGGAA TGTAGCGGAC GCCACGGGCA CAAAGAAATG
  W
  TCTCTTCTCT TTTGTTCTCC ACAGTCAGGG ATACCTACCT AAGACAGAAC TCAGGTACCA
  AACTTCCCAC ATCACATATA CACACACACT TAAATCTAAC CAAGAAATGT TCTACTGGGT
  GAGCTCTTTG TAATGCTGAT ACTTTCAGAC CGTTCAGCAG TAATGACAGA GACCCTTTAC
  AGGATTAGAG AATTCTTGTC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss146305231	ENSMUSSNP3124215	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48396590					SNP	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:17696188 () rs orientation: forward

Symbol	Name	Function Class
Nebl	nebulette	within coordinates
Tssr22758	transcription start site region 22758	1593 bp upstream
Tssr22759	transcription start site region 22759	1487 bp upstream
Tssr22760	transcription start site region 22760	1233 bp upstream
Tssr22761	transcription start site region 22761	1191 bp upstream