rs48397925 SNP Detail

Summary

• ID
  rs48397925
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:44847932 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAC AATATACAAG TTCAGTGGCA
  B
  GGAGAAGCAC TAAAAAATGG TAACT                                      
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
ss63503038	NES17011322	PERLEGEN	MM_PANEL2	f	SNP	G	G	G		G	T		G
ss324947205	CHEV_15_44816082	CHEVERUD	SCREENING_POP	f	SNP				G			C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	CAST/EiJ	LG/J	MOLF/EiJ	PWD/PhJ	SM/J	WSB/EiJ
rs48397925					SNP	G	G	G	G	G	T	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63503038	NES17011322	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:44847932 () rs orientation: forward

Symbol	Name	Function Class
Rr390687	regulatory region 390687	1622 bp downstream