rs48398422 SNP Detail

Summary

• ID
  rs48398422
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29982107 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGGA TGTTCTGCTA AAGCAAGTAC
  R
  TGAAAAGTCA CGTGATGAAG GATGC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
ss148672421	ENSMUSSNP3984943	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G		G
ss322132964	CHEV_7_31067701	CHEVERUD	SCREENING_POP	f	SNP			A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	MSM/Ms	SM/J
rs48398422					SNP	A	G	A	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29982107 () rs orientation: forward

Symbol	Name	Function Class
1700020L13Rik	RIKEN cDNA 1700020L13 gene	within coordinates
Cpgi18786	CpG island 18786	1662 bp distal
Rr644767	regulatory region 644767	1785 bp distal
Rr644768	regulatory region 644768	1260 bp distal
Rr644769	regulatory region 644769	816 bp distal
Rr644770	regulatory region 644770	425 bp distal