rs48399989 SNP Detail

Summary

• ID
  rs48399989
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:89735067 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATGCA ACCCCCAAAT GACAAAGGCA
  Y
  TGAGGGAGGG GGAGCCTAGG CTAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145495000	ENSMUSSNP865877	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
ss322769758	CHEV_8_91532338	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48399989					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:89735067 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20796	CpG island 20796	1622 bp distal
Gm56831	predicted gene, 56831	763 bp upstream
Rr366841	regulatory region 366841	within coordinates
Rr406251	regulatory region 406251	1015 bp distal
Rr667275	regulatory region 667275	871 bp distal
Tssr82368	transcription start site region 82368	1816 bp upstream
Tssr82369	transcription start site region 82369	1785 bp upstream
Tssr82370	transcription start site region 82370	1769 bp upstream
Tssr82371	transcription start site region 82371	1759 bp upstream
Tssr82372	transcription start site region 82372	1728 bp upstream
Tssr82373	transcription start site region 82373	1118 bp upstream