rs48400489 SNP Detail

Summary

• ID
  rs48400489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86350589 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTT TTGTTGTTTT GTTTTAGTGG
  Y
  ACTGCGATTC CTTGTGCATG CTTAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136756105	ENSMUSSNP4625704	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss323056349	CHEV_9_86362143	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48400489					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86350589 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22102	CpG island 22102	681 bp distal
Dop1a	DOP1 leucine zipper like protein A	within coordinates
Rr684098	regulatory region 684098	1372 bp distal
Rr684099	regulatory region 684099	1434 bp distal
Rr684100	regulatory region 684100	625 bp distal
Tssr2956	transcription start site region 2956	572 bp downstream
Tssr86391	transcription start site region 86391	1366 bp downstream
Tssr86392	transcription start site region 86392	1317 bp downstream
Tssr86393	transcription start site region 86393	1275 bp downstream