rs48401160 SNP Detail

Summary

• ID
  rs48401160
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106076606 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TATCC CACTTTACAG GCAGGATAAC
  T
  GAGGCCTAGC GAAGTGAAGA CGCCT                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss136933062	ENSMUSSNP4974720	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss323183401	CHEV_9_106101738	CHEVERUD	SCREENING_POP	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs48401160					SNP	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106076606 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22254	CpG island 22254	within coordinates
Ppm1m	protein phosphatase 1M	174 bp upstream
Rr205657	regulatory region 205657	within coordinates
Tssr3004	transcription start site region 3004	1931 bp upstream
Tssr91296	transcription start site region 91296	252 bp upstream
Tssr91297	transcription start site region 91297	161 bp upstream
Tssr91298	transcription start site region 91298	121 bp upstream