rs48403173 SNP Detail

Summary

• ID
  rs48403173
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:96081495 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTGGCCCAT CTGCTCAATC
  TAGGCCTGCC ATCCATAGTG TCCAGATTCC CTTTCCTTTG AGAAAGGTCT GGTTCTCACT
  TAAGGGAGTC CACAGCTCCT GACCTCTGGT CAGTTCTTGC CTGTGAGTAC CTTGAAAGCT
  GAGCCAAGGC CAACACTCTG CCTCTTTTCA CCCTCCCAGG TGGCAACCAC AGGAATTCAC
  Y
  AGATTAAGGG ACCAGAAACG GGCCTGTGCT AGGAGCTGCT GTATGCCTGC AGACAGCCCC
  TGGTAGCCTG CCTTCCTTGG CAAAGCTACT CCTGAGCTAT TCTGCCCTAG CCTCTGCCAT
  TTTCTCCCCT GGACAGGCAC TGTGATCTAG GACCCCACTT GGATGGTGCC AGCTTGCCAC
  CCCATCCGGA CCCTGACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60651673	NES16269009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48403173					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60651673	NES16269009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:96081495 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20872	CpG island 20872	1092 bp distal
Mmp15	matrix metallopeptidase 15	within coordinates
Rr668227	regulatory region 668227	848 bp distal