rs48403191 SNP Detail

Summary

• ID
  rs48403191
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:172189530 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCTA AAGTCAGAGT CTTCTTAGAG
  T
  TCTGTCCGTC TGGTTTGTTG CAATG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss148314111	ENSMUSSNP684082	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320618231	CHEV_2_172173110	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48403191					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172189530 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12819	CpG island 12819	1227 bp distal
Fam210b	family with sequence similarity 210, member B	within coordinates
Rr56171	regulatory region 56171	within coordinates
Tssr21945	transcription start site region 21945	1984 bp downstream
Tssr21946	transcription start site region 21946	1963 bp downstream
Tssr27939	transcription start site region 27939	1927 bp upstream