rs48403739 SNP Detail

Summary

• ID
  rs48403739
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:100004284 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCATCAACAC CATCACGGTG TTTTGTGGCA TTTGTGAGTC
  AGGCATCTAC AGAGAGACTC ATGGCTAAAG AGTGGACCTA GCCTTTAACG GCTGAGCCAT
  Y
  CATAGGGTGG GGGGTTGGTG GAGAGGGTAA CTGGGAAGTG GGATATCATT TGAGATGTAA
  ACGAATGGAA TGGTTAGTAA AAATTTAAAG AGAGAGAGA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss52683321	NES15524727	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C		C	C	T		C
ss324505360	CHEV_13_100637731	CHEVERUD	SCREENING_POP	f	SNP							T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs48403739					SNP	C	C	C	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52683321	NES15524727	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:100004284 () rs orientation: forward

Symbol	Name	Function Class
Rr269933	regulatory region 269933	717 bp proximal