rs48404142 SNP Detail

Summary

• ID
  rs48404142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:74792371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACACAGA GAAACCCTGT
  CTTGAAAAAA AAAAACAAAA CAAAACAACA AACAAACAAG AAAGAAAGGA AGGAAGGAAG
  GAAGGAAGGA AGGAAGGAAG GAAGGAAGCA TAAGTCTTTC CTAGGTCAAG ATGCTCCTTT
  TGGAAGTGTG GTCGCTCCTT GTGGTATAAC CAGGGTGCTG TAAAACAATT AGCTTCAAGA
  Y
  CAACATTCCT TTACCCTCTC ATATAACGAC AAGGCTTAGA AACCCCTGCC TGCAGCTTTT
  CCCTGTATAA ACCCCCTTCA CCTACACCTC GGGGCCCATT CTCCTATCCC GTTACATCAG
  GAAGGTGTGT GGCCCAAGTT CAAGCTTGAA TAAAGACTTA CATGTGCTTG CATGGGAGTT
  ATGGTTCCAG GTGGTCTCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss52570508	NES15642334	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48404142					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52570508	NES15642334	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:74792371 () rs orientation: forward

Symbol	Name	Function Class
Gm62019	predicted gene, 62019	1748 bp downstream
Gm62792	predicted gene, 62792	within coordinates
Tssr131597	transcription start site region 131597	1793 bp downstream
Tssr131598	transcription start site region 131598	1754 bp downstream
Tssr131599	transcription start site region 131599	1955 bp upstream
Tssr134806	transcription start site region 134806	254 bp downstream