rs48404453 SNP Detail

Summary

• ID
  rs48404453
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:60032453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTG GCGCCATGGG AAAGAAGGTC
  Y
  GTCCCAGAGA ATTCCTGGGA CTGCA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss132248287	ENSMUSSNP6677210	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48404453					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:60032453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2977	CpG island 2977	679 bp distal
Gm53710	predicted gene, 53710	1257 bp upstream
Gm72548	predicted gene, 72548	676 bp upstream
Rai1	retinoic acid induced 1	within coordinates
Tssr101878	transcription start site region 101878	1602 bp downstream
Tssr101879	transcription start site region 101879	1547 bp downstream