rs48405315 SNP Detail

Summary

• ID
  rs48405315
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:153677222 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAAGTACAA GTGGTAGACA
  CGATCTGTTA TCTGTGGCTT ACAGTTTCTG TAGGAAAACT CTAGATCATA AGGGTAGAGC
  ATAGTTTTTA TTTTTACCAC TGAAGTCTCA GCACCTGCTG AAGCGCATAC CCTAAAGCAT
  TCTCGGTAAT GGCCATGAAT GAATTAATGA AGCAGTTGAA TAAGTCTATA GAGTGGACAC
  K
  TTATGCCAGT CGAAAACTTG GCAGATGGAT GTGCACTGAC AGAAAAGGAT GTTCAATCTA
  AAATGGTAAG GAAAATGGTA AATTATAAAT GAAAAATGTG GAGATTTTAT ATAGATATAT
  AGAGAGACAC AGATATGTGT GTATGCATAT ATGTTCAGAA TGTAGGCTTC AAAGCATTGG
  CGGTGTTCTG AAGACTGTGT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60819758	NES16430139	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48405315					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60819758	NES16430139	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:153677222 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41974	predicted gene, 41974			within coordinates
Rgsl1	regulator of G-protein signaling like 1			Intron
				Noncoding-Transcript-Variant
Rr420756	regulatory region 420756			1315 bp proximal