rs48405466 SNP Detail

Summary

• ID
  rs48405466
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:121946712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA AAAATTCAAA TTACTGTGGC
  R
  AGCAATCTAG GAAGACACTC AATAT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss147409281	ENSMUSSNP5983872	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320487076	CHEV_2_121941967	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48405466					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121946712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12168	CpG island 12168	1726 bp proximal
Rr55508	regulatory region 55508	1088 bp proximal
Rr58060	regulatory region 58060	within coordinates
Rr373779	regulatory region 373779	1165 bp upstream
Spg11	SPG11, spatacsin vesicle trafficking associated	within coordinates
Tssr19802	transcription start site region 19802	693 bp upstream