rs48405618 SNP Detail

Summary

• ID
  rs48405618
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:77042064 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGATGTCC ACAAAGCTCT
  CTGGGGGTCT GAGGTGACTT GACCAGGGGC CTGGTGCTGG AAGCAGGTGA TGCTCCTATT
  GTTCCTTCAG GGTCTCTGGG GCTTCTAGCC TTTGGCTCAA TCTTACCAGA CTTCCTCTTG
  AGGTCCACCA CTGCTCAATG CAAGTATTAA GAAACCCATT GTAAATGATC AGTATCAAAG
  Y
  CAAATCTGAC ATATACAGCA GAGGCCTGCT TGGTCTGGCC TCATTCAGAG GAGATGTACC
  TAACCCTCAA GAGACTTGAG ACCCCAGGGA GTGGGAAGGG GACATCCTAT TAGAGATAGG
  GAGGAGGAGG AATGGGATAA AGAACTGTTG GAAGGATAAC TGGGAGGGGG ATAATGACTG
  GAGTGTAAAA AATAAGATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60754648	NES16397718	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48405618					SNP	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60754648	NES16397718	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:77042064 () rs orientation: forward

Symbol	Name	Function Class
Gm70876	predicted gene, 70876	within coordinates
Tfdp1-ps	transcription factor Dp 1, pseudogene	443 bp upstream
Tssr7562	transcription start site region 7562	439 bp upstream