rs48406326 SNP Detail

Summary

• ID
  rs48406326
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:125197682 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTATATGTA CATGCACATG
  TATATGTATA TATTAGTTGG GAACTGTTGT CCTTATTTGA AACTTTTCTC CCATACCAGG
  CCTGCCTTTG GTCCCAGAGG TCTGTTTAAA GACCAACTTC AAATCCCTTT TAGAAAAAGT
  CAGACTTGTA TTTTGTAGCT ACTCTTTACA TGTCAGTACA GGATTTTCTG TGTCTGTGGG
  R
  AACTTTACAG CCTTTCGCTC GCTTTGTTCT CTGTAGGCCT AGGAAAGGCG TACTTTCTGG
  TTGTAAAAAC ACCAGGACAC TCTTACCTTC TCCTAGAAGC CATCCCACAT GCTTCTCTTC
  ATGTCACCTG AAGCATTTGA TGTTATTCAT GAAGGCACCA AATAATTTCA GGGAATCAGG
  GGCTTGGAAA ATAACAAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60940124	NES16188567	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	DBA/2J	FVB/NJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48406326					SNP	G	G	G	G	G	A	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60940124	NES16188567	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:125197682 () rs orientation: forward

Symbol	Name	Function Class
Rr133009	regulatory region 133009	1082 bp distal
Rr147527	regulatory region 147527	319 bp proximal
Rr368188	regulatory region 368188	1468 bp upstream
Tssr58932	transcription start site region 58932	1725 bp downstream
Tssr58933	transcription start site region 58933	1005 bp upstream
Tssr58934	transcription start site region 58934	1106 bp upstream
Tssr58935	transcription start site region 58935	1170 bp upstream
Vamp1	vesicle-associated membrane protein 1	within coordinates