rs48407370 SNP Detail

Summary

• ID
  rs48407370
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123302497 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCGCCTC CCCCGGCATC
  ACTTCCTATG GCGCCGGCCC TTTGTCCCCG AGAGCTGTTG GCGGCTCCTC TGCCCCCATC
  GGGGTTGATG GTTCCGCTTG CGCCCTTCCG CTTGCCCTTT TGATCTGATC TCACTTTTGC
  CCGACACAGC GCGCCGGAAG GTTTCTCGAA CCGGGAGAAC GGGAAGCCTG GGCAGTGCGA
  R
  CAGACCCGCC CGGCCCTCGG CTTTTCCGGG AGGAAGGCAT ATCTCACTCC CGCGTGCAGC
  CCGCTATGAG ACAGAATAGA GGGCCTTTAG TGATGGAGTA TGGAGATGAC AGTTGTCGTC
  ATGGAGAATG TTAGTTAGAA AGCTGTGATC ATTACAGGCT GGGAAGGGTG CGGTTAGGGC
  AACACCGTGC AGGAGTCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60445521	NES15941788	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48407370					SNP	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60445521	NES15941788	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123302497 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13780	CpG island 13780	within coordinates
Gm9369	predicted pseudogene 9369	1094 bp downstream
Rr397991	regulatory region 397991	1814 bp downstream
Rr584523	regulatory region 584523	1929 bp distal
Rr584524	regulatory region 584524	1794 bp distal
Rr584525	regulatory region 584525	within coordinates
Rr584526	regulatory region 584526	71 bp proximal
Rr584527	regulatory region 584527	462 bp proximal
Snhg8	small nucleolar RNA host gene 8	512 bp upstream
Snora24	small nucleolar RNA, H/ACA box 24	782 bp upstream
Tssr31551	transcription start site region 31551	280 bp downstream
Tssr31552	transcription start site region 31552	233 bp downstream
Tssr35502	transcription start site region 35502	507 bp upstream
Tssr35503	transcription start site region 35503	67 bp downstream