rs48407473 SNP Detail

Summary

• ID
  rs48407473
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137177347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAT GGGCTTTTGA AAAGCGATCC
  W
  GACTGAGGTA TCACTGACAA GAACA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss640941685	FVB_NJ_5_137624370	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	T	A	A	A	A	A	A	T	T	T	T	A	A	T	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	T	A	A	T	A	T	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs48407473					SNP	A	A	A	A	A	T	A	A	A	A	A	A	T	T	T	T	A	A	T	A	A	A	A	A	A	A	A	T	A	A	A	A	A	T	A	T	A	A	A	T	A	A	A	A	T	A	A	T	A	T	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss640941685	FVB_NJ_5_137624370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137177347 () rs orientation: forward

Symbol	Name	Function Class
Muc17	mucin 17, cell surface associated	within coordinates
Tssr1677	transcription start site region 1677	760 bp downstream
Tssr1678	transcription start site region 1678	1985 bp downstream
Tssr49309	transcription start site region 49309	1279 bp upstream
Tssr49310	transcription start site region 49310	1639 bp upstream
Tssr49311	transcription start site region 49311	1653 bp upstream
Tssr53917	transcription start site region 53917	1793 bp upstream
Tssr53918	transcription start site region 53918	1733 bp upstream
Tssr53919	transcription start site region 53919	1139 bp downstream
Tssr53920	transcription start site region 53920	1155 bp downstream
Tssr53921	transcription start site region 53921	1310 bp downstream
Tssr53922	transcription start site region 53922	1351 bp downstream
Tssr53923	transcription start site region 53923	1392 bp downstream
Tssr53924	transcription start site region 53924	1406 bp downstream
Tssr53925	transcription start site region 53925	1444 bp downstream
Tssr53926	transcription start site region 53926	1475 bp downstream
Tssr53927	transcription start site region 53927	1624 bp downstream
Tssr53928	transcription start site region 53928	1642 bp downstream
Tssr53929	transcription start site region 53929	1679 bp downstream
Tssr53930	transcription start site region 53930	1744 bp downstream
Tssr53931	transcription start site region 53931	1769 bp downstream
Tssr53932	transcription start site region 53932	1785 bp downstream
Tssr53933	transcription start site region 53933	1823 bp downstream
Tssr53934	transcription start site region 53934	1855 bp downstream
Tssr53935	transcription start site region 53935	1906 bp downstream
Tssr53936	transcription start site region 53936	1927 bp downstream