rs48408270 SNP Detail

Summary

• ID
  rs48408270
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122836467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGACGCCC AGTGTTGACC
  TGGTCTCCAC ATTCACGCAT GTGCATGTAC CCTCCCAGAG ATTTCAAAAC CTTAAGAGAA
  TTCTTCGTGA CTAGCCTGTG TGGGCTTAGG GGTTATTCTT ACCCACATTC AAACAACCGA
  AACCCCAAAA TAAAATGTGG TAAACATGAC GGTTGGTTTC AGAGTCTGGT GATCCTTCTC
  Y
  CTTGGCTGCA AGCTTTATCA ACTCTTATCT CAGGACAGCG ATCGAGGGAG GCCCAAGACA
  CAGGAAGAGC AAGGCAACCC CTAGAAAAAG GCTCATCAGG TAGAATGCAT TTGAGCTTTT
  TTTAGTCAGC TGTAAAGCAG GAGTCTGAGT ACCACACCCA TGATGCTTTG CAAACAGAAA
  CTGTTGCTTA GAGCCAACAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	MSM/Ms
ss149189846	ENSMUSSNP1572608	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	MSM/Ms
rs48408270					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122836467 () rs orientation: forward

Symbol	Name	Function Class
Gm10064	predicted gene 10064	804 bp upstream
Gm71244	predicted gene, 71244	within coordinates
Rr378567	regulatory region 378567	within coordinates
Rr619948	regulatory region 619948	within coordinates
Rr619949	regulatory region 619949	1811 bp proximal