rs48408758 SNP Detail

Summary

• ID
  rs48408758
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:36984901 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGAAGCAT CAGTGCTGTA
  TCTGCCTACC TAGGGTGAAT GACATGAGTT AGGACTGTGG GATCTGAGGA GGTGTCTGCT
  CTATGGGCCA TTTCCAAACA GCTGAGGCAA CTCATTCCAT AATGTGGAAG AAGTCTTATG
  AAGCAACTTG ATTTTAAAAT GAGAAGTAAT GAAAACAGCC TTCATAATCT TGATTAATCA
  Y
  CCCTGAATAG ATTCAACTGA CTATTTCCAC TGGATATCTA GAACTTGAAG ATAAGGGAGT
  AAAAAGGATG ACAAGAATTC TATAAGTATT GAGAAATCCC AAAAACGTTT TTGTTATGCA
  TATCAATCCA GAACAATTAC TTTTCAATAA AGTAACCCAC GATCTCCTTC AATGTGTTGT
  GTGACGCTGG ATTAGAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61769434	NES17696867	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48408758					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61769434	NES17696867	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:36984901 () rs orientation: forward

Symbol	Name	Function Class
Rr388271	regulatory region 388271	1302 bp downstream