rs48410521 SNP Detail

Summary

• ID
  rs48410521
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:67018885 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGATCTCAG GCAGGCTGGC TCTGTTACCC TCCCCTTCCC
  CTTCCTCCTC CTCACCCAGC CATTGATTTC AGAAAGGGCT GAAAACTATT TGGGTGTGCT
  K
  GCTTAGTAAA GTGGAAGCAT GTAGGAATGT AAGTAGTAGC TATTTGGGCC AGTATCGAGA
  AAGAGGAAAA GTTCCCAAAG TCAAAACACC TCAAGGCCAC                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63541921	NES17020652	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48410521					SNP	T	T	T	T	T	T	T	T	T	T	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63541921	NES17020652	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:67018885 () rs orientation: forward

Symbol	Name	Function Class
Gm63615	predicted gene, 63615	205 bp upstream
Rr404420	regulatory region 404420	1338 bp downstream
St3gal1	ST3 beta-galactoside alpha-2,3-sialyltransferase 1	within coordinates
Tssr134620	transcription start site region 134620	539 bp upstream