rs48410949 SNP Detail

Summary

• ID
  rs48410949
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148527623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTG CCTGTCTCTG CCTCCCAAGT
  A
  CTGGGATTAA AGGCGTGCGC CACTA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148007660	ENSMUSSNP6557029	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321420458	CHEV_4_147817275	CHEVERUD	SCREENING_POP	f	SNP				A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48410949					SNP	A	A	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148527623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15303	CpG island 15303	1012 bp proximal
Gm23303	predicted gene, 23303	186 bp downstream
Rr604684	regulatory region 604684	1569 bp proximal
Rr604685	regulatory region 604685	1595 bp proximal
Tssr44605	transcription start site region 44605	1289 bp downstream
Tssr44606	transcription start site region 44606	1567 bp downstream
Tssr44607	transcription start site region 44607	1578 bp downstream
Ubiad1	UbiA prenyltransferase domain containing 1	within coordinates