rs48411948 SNP Detail

Summary

• ID
  rs48411948
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  127
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38333242 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTTTCTCAA TCGAGGTCCC CTCATCCCAG ATGATCCTAG
  CTTGTGTCAA GCTGACAAAA CTAACCAGCA CACCTACTGA GACCATACTT AGACAGCTAG
  S
  AAGGGTTGCT GCCTGAACAA AAGACATTAA TATGTCCTTA GCAGCAGAGT GGTTTGATAG
  TCAAGGATCT GTGGCATCCT GTTATCTTGC AATGCACACA                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60391407	NES15888826	PERLEGEN	MM_PANEL2	f	SNP	C	G	C	C	C	C	G
SNP Consensus Information
SNP					Consensus Type	BALB/cByJ	CAST/EiJ	FVB/NJ	KK/HlJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48411948					SNP	C	G	C	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60391407	NES15888826	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38333242 () rs orientation: forward

Symbol	Name	Function Class
Rr575652	regulatory region 575652	928 bp proximal