rs48411968 SNP Detail

Summary

• ID
  rs48411968
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:102604049 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACCTGCTCT TTTTTTATAA
  CTTAGAAGCA TCTGCCTATG GTTGCCACCA CCCACAGTAG GCTGGACCTT CCAACATCAA
  TTATTAATCA AGAAAAGGCA TGATGTGCTT GCCCTGTTGA ATAAAGTCCT TTCCTCAATT
  GAGATTCCTC AGATTTCTTA CTGATGGAGA CACCTGCTCC AGCACAGATA ACAGAGAGTT
  R
  GATGTTCTTA AACTTGTGTA CTCCAGGGAT GTTTAAATGC TACCCGTAAT ATCAATTACT
  ATAGCCTTAA TAGACAGTCT ATGAAGGTTC TGTATTTAAA TTTTCAACTT TGAGCAATTA
  AAAAGAGCAA CAAACTGCTT TCAGACTTTT AACTCTGATA TGGGAAAACT CTTTTTTGTT
  TTTACCTAAA TCTGATGCAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss61961491	NES17118839	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48411968					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61961491	NES17118839	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:102604049 () rs orientation: forward

Symbol	Name	Function Class
Gm41045	predicted gene, 41045	1792 bp downstream