rs48412187 SNP Detail

Summary

• ID
  rs48412187
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115873508 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATTCCTT ATGGCTAGAA
  GTCATCCTTC CCGTAGGCAG GAACTGTGGG CAGACTCCCG CGCCTGCTCA CCCAAGCTGT
  GCTGAAAGCT GGCTGCACAG AAGGACATGG AGGAGCAGCC AAGGCTCCCC AGGCCTAGCC
  CAGAATCAGC ATGAGGATCC TGAGATGGTA CCACCAAGGA ATAACCAAAG AACCTGTGCT
  M
  GCTCAGGTAG AGGTGGCAGG TATGGGATCC GAGCCTCCCA AACTAGGAGG TGCCAGCTCC
  AAACACTGCC TGGGTAGGCT GGAACCAAGG GACTTTTATT TCAATAGAGA CATAAGATGC
  ATGCTGGACT TAGTGAGGAG TAATTTAGAG TATTACAGCC AGCCAAAGTT TTGCCGGCAT
  TCGGGGCACA GCTGGGTAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss147277426	ENSMUSSNP1720546	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48412187					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115873508 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14625	CpG island 14625	877 bp proximal
Faah	fatty acid amide hydrolase	within coordinates
Rr99792	regulatory region 99792	within coordinates
Tssr38488	transcription start site region 38488	499 bp downstream
Tssr38489	transcription start site region 38489	954 bp upstream
Tssr42842	transcription start site region 42842	1345 bp downstream
Tssr42843	transcription start site region 42843	1543 bp downstream
Tssr42844	transcription start site region 42844	1712 bp downstream
Tssr42845	transcription start site region 42845	1731 bp downstream
Tssr42846	transcription start site region 42846	1776 bp downstream
Tssr42847	transcription start site region 42847	1809 bp downstream
Tssr42848	transcription start site region 42848	1825 bp downstream
Tssr42849	transcription start site region 42849	1842 bp downstream