rs48412299 SNP Detail

Summary

• ID
  rs48412299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21334862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTACACTGCC AACCTCTGAT
  CCTCCCATTT TTCTTTCTCA GTGATGCTTG AGAGTGACTG GATACAGGTT TTTCTGTTCT
  ATTTTCTACT ACAATTTTTC TATTTGGGTC TATGGATCTG AGAAATAAAT TGTTCACCCT
  TAAAACCAAC AGAAGTGATG AATCTGCAGG ATTAATATCC AAAGAAGATG GAAAAAACTC
  R
  AACAAAATGA ATCTTTAAGA TATATTGGGG CAAAGCTCCA TTTCCTTCCT CTCATCTTCA
  TTCTCTCTGG GTGTCTGTCT CCAACCTCCA CCCTGGTGCT GATGGAGGGG CTCGGTTAGT
  CATTTGACTG GCAGGGGCAC AGGGCAGGGC AAGCAATAAC TCTTTCTTCG GCTGCTCTCT
  GAGGCTCTGC TTTGTCTGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60707915	NES16351394	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48412299					SNP	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60707915	NES16351394	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21334862 () rs orientation: forward

Symbol	Name	Function Class
Gm28836	predicted gene 28836	within coordinates
Gsta3	glutathione S-transferase, alpha 3	within coordinates
Tssr6075	transcription start site region 6075	1804 bp downstream
Tssr6076	transcription start site region 6076	1770 bp downstream
Tssr6077	transcription start site region 6077	1735 bp downstream
Tssr6078	transcription start site region 6078	198 bp upstream