rs48413150 SNP Detail

Summary

• ID
  rs48413150
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:64520320 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGCTGAAC TTCTGCAGTA
  GCCTTATCTG CAGAGACTTC CTCAATTATT GGAGGCTTAT ATTCTTCAAA GACCTCATCA
  GTAGCAAATT TCTCATTTAT TAAAATAGCA CTTTCTTCAA AGTCTGCAGC TATCGGAAAA
  TGAACTTCAG CAGGTACTTC TTTAGAAGTC TCTTCAGACA GAGGATGTTG AACTTTACCA
  K
  ATGTCTCTTC AGCAATAGTA GACTCTGCTA TTCCCAAGTC TTCAAGCATA GAGTCAGTTG
  TTAAAGCTTG AACTTTCTCA AGCACCTCTT CTGAGAATGG ATCCAGATCT TCAACAGGAA
  GTTCTGAAGG AGCCATCTCA GTACCTTGAG GATACTGTTG ATCAGAAGGC TTGTCTGAAA
  GAGCCCCTTG CACTAATGTA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss61636031	NES17586929	PERLEGEN	MM_PANEL2	f	SNP	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48413150					SNP	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61636031	NES17586929	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:64520320 () rs orientation: forward

Symbol	Name	Function Class
Fscb	fibrous sheath CABYR binding protein	within coordinates
Tssr3851	transcription start site region 3851	1371 bp downstream
Tssr116460	transcription start site region 116460	1339 bp downstream