rs48413261 SNP Detail

Summary

• ID
  rs48413261
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:75929683 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTCAAATT ATTTGGATGA
  GACATCACCA AATCAGGGTG ACCCACCCTC AGATAATCCA TAGAGGGAGA ATATTTAAGG
  GTCCAATGAA AATATTCTGT TCAGTTATAG TATCTAGCCA CTATGGCCGG GGAACTGCTT
  CAGCAGATAG ATCCGTTGTA ATTGCCACCC GGTACCTATA TGTTAGGATG TAAGCATCCC
  R
  TCTTGCATGC TCAGGAAATG TCTCTGGTTA TAACAGAAGC AGTGGGGAGG CCCGAGGGGG
  ACTGAAAGTC ACCATCTGAA AGCTGTGCGC ATACTGAGAT GGAAGGACAG CAACAGTACG
  CTATGCTCCT TTATCCTTTC TAGGGGAAAT GGTCTTTCTT AGCTACCTGT GCCCACTACT
  ACTCTGTGCA GACAATGCCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146770232	ENSMUSSNP6907869	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48413261					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:75929683 () rs orientation: forward

Symbol	Name	Function Class
Pde11a	phosphodiesterase 11A	Intron
Rr559647	regulatory region 559647	1841 bp distal
Rr559648	regulatory region 559648	465 bp distal
Rr559649	regulatory region 559649	257 bp proximal