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rs48413917 SNP Detail
Summary
  • ID
    rs48413917
  • Variation Type
    SNP
  • Alleles
    A/C
Genome Location and Flanking Sequence
  • Location
    Chr13:98829573 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                          ATAAGAAAAT CTTTTTAAAA AATAAATAAA ATGACTGGTG
    GTGTGGGTGT GGCTTTTCCT GTCCTGAGTC CTACAAACTC ATTCCTCCAG CCCCCCCCCC
    M
    AAAAAAGGCA GATAAGGAAA GAGCAACAGG AATAGTTTCT GATCTACAAC TGCCTAGAAT
    GATGTCAGAA CTGCTCTGAG CATCTTGGTA AATTTTTGT                       
    
    M = A/C
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
A/J
DBA/2J
LG/J
SM/J
ss145056211 ENSMUSSNP1904724 ENSEMBL ENSEMBL_Sanger f SNP C A
ss324500816 CHEV_13_99463020 CHEVERUD SCREENING_POP f SNP C A
SNP Consensus Information
SNP Consensus Type
A/J
DBA/2J
LG/J
SM/J
rs48413917 SNP C A C A
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr13:98829573 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi6012 CpG island 6012 1633 bp proximal
Rr281821 regulatory region 281821 227 bp proximal
Tmem171 transmembrane protein 171 within coordinates
Tssr120815 transcription start site region 120815 743 bp downstream
Tssr123632 transcription start site region 123632 880 bp upstream
Tssr123633 transcription start site region 123633 848 bp upstream
Tssr123634 transcription start site region 123634 340 bp upstream
Tssr123635 transcription start site region 123635 331 bp upstream
Tssr123636 transcription start site region 123636 278 bp upstream
Tssr123637 transcription start site region 123637 258 bp upstream
Tssr123638 transcription start site region 123638 54 bp downstream
Tssr123639 transcription start site region 123639 1704 bp downstream
Tssr123640 transcription start site region 123640 1741 bp downstream
Tssr123641 transcription start site region 123641 1760 bp downstream
Tssr123642 transcription start site region 123642 1828 bp downstream
Tssr123643 transcription start site region 123643 1959 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory