rs48413917 SNP Detail

Summary

• ID
  rs48413917
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:98829573 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATAAGAAAAT CTTTTTAAAA AATAAATAAA ATGACTGGTG
  GTGTGGGTGT GGCTTTTCCT GTCCTGAGTC CTACAAACTC ATTCCTCCAG CCCCCCCCCC
  M
  AAAAAAGGCA GATAAGGAAA GAGCAACAGG AATAGTTTCT GATCTACAAC TGCCTAGAAT
  GATGTCAGAA CTGCTCTGAG CATCTTGGTA AATTTTTGT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss145056211	ENSMUSSNP1904724	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A
ss324500816	CHEV_13_99463020	CHEVERUD	SCREENING_POP	f	SNP			C	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48413917					SNP	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:98829573 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6012	CpG island 6012	1633 bp proximal
Rr281821	regulatory region 281821	227 bp proximal
Tmem171	transmembrane protein 171	within coordinates
Tssr120815	transcription start site region 120815	743 bp downstream
Tssr123632	transcription start site region 123632	880 bp upstream
Tssr123633	transcription start site region 123633	848 bp upstream
Tssr123634	transcription start site region 123634	340 bp upstream
Tssr123635	transcription start site region 123635	331 bp upstream
Tssr123636	transcription start site region 123636	278 bp upstream
Tssr123637	transcription start site region 123637	258 bp upstream
Tssr123638	transcription start site region 123638	54 bp downstream
Tssr123639	transcription start site region 123639	1704 bp downstream
Tssr123640	transcription start site region 123640	1741 bp downstream
Tssr123641	transcription start site region 123641	1760 bp downstream
Tssr123642	transcription start site region 123642	1828 bp downstream
Tssr123643	transcription start site region 123643	1959 bp downstream