ATAAGAAAAT CTTTTTAAAA AATAAATAAA ATGACTGGTG GTGTGGGTGT GGCTTTTCCT GTCCTGAGTC CTACAAACTC ATTCCTCCAG CCCCCCCCCC M AAAAAAGGCA GATAAGGAAA GAGCAACAGG AATAGTTTCT GATCTACAAC TGCCTAGAAT GATGTCAGAA CTGCTCTGAG CATCTTGGTA AATTTTTGT M = A/C Note: Sequence in lower case indicates low-complexity or repetitive sequence |
Assay ID | Submitter SNP ID |
Submitter Handle |
Population | ss orientation |
Variation Type | A/J |
DBA/2J |
LG/J |
SM/J |
---|---|---|---|---|---|---|---|---|---|
ss145056211 | ENSMUSSNP1904724 | ENSEMBL | ENSEMBL_Sanger | f | SNP | C | A | ||
ss324500816 | CHEV_13_99463020 | CHEVERUD | SCREENING_POP | f | SNP | C | A | ||
SNP Consensus Information | |||||||||
SNP | Consensus Type | A/J |
DBA/2J |
LG/J |
SM/J |
||||
rs48413917 | SNP | C | A | C | A |
Location: Chr13:98829573 () rs orientation: forward | ||||||||
Symbol | Name | Transcript | Protein | Function Class |
Allele | Residue | Codon Position |
AA Position |
---|---|---|---|---|---|---|---|---|
Cpgi6012 | CpG island 6012 | 1633 bp proximal | ||||||
Rr281821 | regulatory region 281821 | 227 bp proximal | ||||||
Tmem171 | transmembrane protein 171 | within coordinates | ||||||
Tssr120815 | transcription start site region 120815 | 743 bp downstream | ||||||
Tssr123632 | transcription start site region 123632 | 880 bp upstream | ||||||
Tssr123633 | transcription start site region 123633 | 848 bp upstream | ||||||
Tssr123634 | transcription start site region 123634 | 340 bp upstream | ||||||
Tssr123635 | transcription start site region 123635 | 331 bp upstream | ||||||
Tssr123636 | transcription start site region 123636 | 278 bp upstream | ||||||
Tssr123637 | transcription start site region 123637 | 258 bp upstream | ||||||
Tssr123638 | transcription start site region 123638 | 54 bp downstream | ||||||
Tssr123639 | transcription start site region 123639 | 1704 bp downstream | ||||||
Tssr123640 | transcription start site region 123640 | 1741 bp downstream | ||||||
Tssr123641 | transcription start site region 123641 | 1760 bp downstream | ||||||
Tssr123642 | transcription start site region 123642 | 1828 bp downstream | ||||||
Tssr123643 | transcription start site region 123643 | 1959 bp downstream |
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO) |
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last database update 12/17/2024 MGI 6.24 |
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