rs48414690 SNP Detail

Summary

• ID
  rs48414690
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:60724506 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTGTGGAAA AAAATCAAGT
  TCAGCCAAGC CTGAGGCACC AGATTCAGGA AGCCATCCTG AAACCCCTGC TTTGTCTCCT
  GACAAACAGA TGGGGTGAGG TCACAAGGAA GTGACCCCTG AGCTGCGAGT GGACCCTGAG
  CTTAGGGCAC AGAGGCAGAG GAAGAGCAGG AAGCAGGTGC CCCCAGGGTG GGAAGAGTGG
  R
  AGAAGGACTG GCGCTCTTCT GCTGAGTGGG CCAGGAAGTG ACCCGGTGGT GGGAAGTGGC
  TGAAGGTGGT GTGTTCCGGG GTCAGACTGA GTGCAGGGTC GGAAGTGAGC CTAGTAAACA
  AAACTGAGCT GATGGATCGC TCAGGACAAT GTGTGCAGTG GAAGTTTCTA GAAACCCGAA
  GCTGGCATGG AGAAACAATA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss61278403	NES16780531	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	G	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs48414690					SNP	A	A	A	A	A	A	A	G	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61278403	NES16780531	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:60724506 () rs orientation: forward

Symbol	Name	Function Class
Gm36750	predicted gene, 36750	within coordinates
Gm66331	predicted gene, 66331	616 bp upstream
Rr432239	regulatory region 432239	45 bp distal
Rr432240	regulatory region 432240	within coordinates
Rr432241	regulatory region 432241	1153 bp proximal