rs48415164 SNP Detail

Summary

• ID
  rs48415164
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:126776502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GCCACTTTTA GAATCCTTCT AGGACACTGA TGTTTAAGCT
  AATCTCCCCT TTCCACTGGG ATCCTAGATA CTTGCTCATC TGATGAGAGC AATATATCTG
  R
  ATTTTAAAAA CATTTCCAGA TTTAATATAC AGCCAAGCTT AAAAACCTTT CATTATTTAG
  TGTTTCAGAG TGCTGGCCTG GACCACGGCT CCTGACTGC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147514371	ENSMUSSNP2768863	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48415164					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:126776502 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12210	CpG island 12210	1178 bp distal
Gm75308	predicted gene, 75308	within coordinates
Rr564422	regulatory region 564422	1495 bp distal
Rr564423	regulatory region 564423	1506 bp distal
Rr564424	regulatory region 564424	1358 bp distal
Rr564425	regulatory region 564425	857 bp distal
Sppl2a	signal peptide peptidase like 2A	1347 bp upstream
Tssr26085	transcription start site region 26085	1492 bp upstream
Tssr26086	transcription start site region 26086	1449 bp upstream
Tssr26087	transcription start site region 26087	1418 bp upstream
Tssr26088	transcription start site region 26088	1355 bp upstream
Tssr26089	transcription start site region 26089	1341 bp upstream
Tssr26090	transcription start site region 26090	702 bp upstream