rs48415410 SNP Detail

Summary

• ID
  rs48415410
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135764321 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCCTGTTC AGAGGTAAGA CAAGGGGGAG
  CTCTAGGAAG GGACAGAGGT CAGTGGGGGA ACATGAGGGA TTTGTTCCTG ACATCTCTCC
  TTAGTCTTTT GCTTGTGTCC ACCCTGAGTG GTTACCAGGA AATCCATGGC CCTTTCAAGA
  R
  AGGATAACAC CTACCTCCAC ATTCAGAGTG GGTGTTTCCA GGACAGACTC TAACATGAGT
  GCTGTGGAGT GGAGAGTGCT TGCATTCTTG ACGGGAAGTG AGTTGGAGGT CCCGATCTGC
  CCCTGAAGAT GCTTTGTGGT TTCAAAGTCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145547978	ENSMUSSNP739876	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss319993827	CHEV_1_137733160	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48415410					SNP	A	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135764321 () rs orientation: forward

Symbol	Name	Function Class
Rr419292	regulatory region 419292	1720 bp distal
Rr419294	regulatory region 419294	160 bp distal
Rr419295	regulatory region 419295	within coordinates
Rr419296	regulatory region 419296	309 bp proximal
Rr419297	regulatory region 419297	1166 bp proximal
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	187 bp downstream
Tssr9006	transcription start site region 9006	1827 bp upstream